Published FORRT nanopublication constellation

This chapter is the canonical cross-chain view of the three-repository constellation. Every nanopub URI links to the Science Live platform viewer (replace <URI> in https://platform.sciencelive4all.org/np/?uri=<URI> if a direct link doesn’t open).

What is in the constellation¶

Three FORRT chains, derived from Soroye et al. 2020 (Soroye et al. (2020)) — the same upstream paper anchors all three. The three chains test complementary claims:

• weatherxbiodiversity-projection (Zenodo: Fouilloux (2026)) — replicates Soroye’s TEI-based extirpation mechanism on Iberian Bombus at the original CEA grid + HEALPix nside=64. Outcome: Validated → CiTO confirms Soroye 2020.

• weatherxbiodiversity-projection-nside128 (Zenodo: Fouilloux (2026)) — same mechanism, refit at HEALPix nside=128 (DestinE Climate DT native pixelisation). Outcome: Validated → CiTO confirms Soroye 2020 + extends the nside=64 sibling.

• weatherxbiodiversity-substrate-sensitivity (this repository) (Zenodo: Fouilloux (2026)) — methodological diagnostic showing that the same fitted GLMM, when projected to SSP3-7.0, has grid-coupled per-species rankings for low-N species. Outcome: PartiallySupported → CiTO qualifies Soroye 2020 + extends both upstream chains.

Eighteen unique nanopubs in total. The Quote (Soroye’s verbatim sentence) is shared across all three chains; the AIDA + Claim for the mechanism finding are shared across the two replication chains; the substrate-sensitivity chain has its own AIDA + Claim about the methodological finding; each chain has its own Study, Outcome, CiTO Citation, and Research Software nanopub; one Research Synthesis at the apex pulls all three Outcomes together.

Constellation graph¶

Reading the graph: solid arrows are chain-derivation links (each step references the URI of the previous step’s nanopub); dotted arrows are the optional Research Software back-links to the FORRT Claim. The Synthesis at the apex pulls in all three Outcomes as supporting sources. CiTO Citation cross-references (each chain’s CiTO extends the other chains’ Outcomes) are not drawn — they would clutter; see each CiTO nanopub for its citation list.

Per-chain URI registry¶

Chain 1 — weatherxbiodiversity-projection (canonical Iberian Bombus replication)¶

Chain 2 — weatherxbiodiversity-projection-nside128 (substrate extension)¶

Chain 3 — weatherxbiodiversity-substrate-sensitivity (this repository, methodological diagnostic)¶

How to view a nanopub¶

Open any URI directly in your browser. Science Live’s viewer renders the four named graphs (Head, Assertion, Provenance, PublicationInfo) of each nanopub. If a direct link doesn’t resolve (some networks block the redirect), wrap the URI in the viewer URL:

https://platform.sciencelive4all.org/np/?uri=<full-URI>

Format notes¶

• URIs from Science Live are of the form https://w3id.org/sciencelive/np/RA…. URIs from Nanodash (used as a fallback when the Science Live UI hits a bug) are of the form https://w3id.org/np/RA…. Both are valid and citable.

• The trailing … in the diagram are visual truncations; the URIs above are full.

• Nanopubs are immutable once published. To correct a published nanopub, publish a retraction or supersession nanopub (see docs/programmatic-nanopubs.md).